Rsubread is Bioconductor R package, which provides facilities to performing read alignments using the Subread aligner. It also includes other functionalities such as featureCounts read summarization function.
The Subread read aligner and Subjunc junction detector employ a novel read mapping paradigm called "seed-and-vote" to achieve a fast mapping speed and a high mapping accuracy. The seed-and-vote paradigm is particularly powerful in detecting indels. Subjunc can be used to discover exon-e...